From a sequence result, you can:
Retrieve sequence records from the CAS REGISTRYSM database
Retrieve CAplusSM reference records for sequences
Retrieve both sequences and references
You can also:
Transfer alignment data for STN Express® postprocessing
To retrieve sequences, reference records or both from STN databases:
Choose the sequences for which you wish to retrieve STN data:
All sequences (default)
A single sequence - Click on the hyperlink.
Result: Clicking the hyperlink takes you directly to STN.
Selected sequences - check the sequences desired.
Range of sequences - Click the bar for the range desired. Optionally, check individual sequences within that range.
Click
Get STN Data in the lower
left corner of the CAS Registry BLAST Report window.
The Get STN Data dialog displays.
At the bottom of the dialog, keep the default selection for Transfer all alignment data for postprocessing if you want to include BLAST alignment data in an STN Express report.
Choose to retrieve:
Sequence Records - from the CAS REGISTRY database (recommended option)
Reference Records - from CAplus/HCAplus
Both Sequence
and Reference Records
NOTE: The sequence and/or
bibliographic records retrieved are indexed by the CAS Registry
Numbers of your subject sequences.
The Save File As window displays.
Enter
a filename for the sequence data.
Format: Data is saved as an
STN Express Saved Sequences (.xss) file.
The STN Online and Results window displays. A login screen may display.
Log
in if necessary.
The Capture Session Dialog displays.
Enter
a File name for this STN transcript
file.
Format: The default format
is STN Transcript file (*.trn), but a .RTF file can also be used.
Keep the default (selected) in order to include structure queries or clear the check box. Click Open. An online session is initiated and STN Express conducts an online search tailored to your request.
If CAplus/HCAplus records are desired, enter desired file, then search final L-Number from REGISTRY. Term, numeric or Lexicon searching can be added at this time.
Display CAplus/HCAplus answers in desired formats, but must include either HIT RN or HIT SEQ format as part of your Display command. These formats are needed for the BLAST Alignment tool to work.
_____
GenBank® is a registered trademark of the U.S. Department of Health and Human Services for the Genetic Sequence Data Bank.
BLAST® is a registered trademark of the National Library of Medicine.
BLAST® reference information provided in whole or in part from the National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health.
Unless designated otherwise, all other information Copyright © 1997-2017 by the American Chemical Society. All rights reserved.