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Defining Common Structure for R-group Analysis

You can define the common structure by:

Click the Use the largest common structure radio button and Define Structure to use the largest common structure.

Click Use a saved structure query file and Define Structure to define the common structure from a saved query structure. A window with your saved query structures is displayed. Select the query structure for defining the common structure in your answer set.

In addition, check Use structure skeleton, ignore bonds if you want the bonds to be ignored when the common structure is defined with either method.

 

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